PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072245.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 298aa    MW: 33924.3 Da    PI: 8.9658
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-087296126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    yk elC  f+r G C yG++C+F+H+
  XP_011072245.1 72 YKSELCLLFQR-GKCYYGANCHFSHS 96
                    99*********.*************8 PP

2zf-CCCH22.22.5e-07125148225
                     -S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaH 25 
                     k+++C+ ++++G  C+yGd+C++ H
  XP_011072245.1 125 KMKECH-WFASGkDCPYGDKCQYLH 148
                     778899.999999************ PP

3zf-CCCH37.44.1e-12197222227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ + r+G C+yG +C++aHg+
  XP_011072245.1 197 KTKLCMKWERFGSCPYGVKCTYAHGK 222
                     8***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.2E-770101IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-47197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8597198IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-67296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-1072103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6120149IPR000571Zinc finger, CCCH-type
SMARTSM003560.21123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6123151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46124151IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4125148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8194226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-13194226IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-5195222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117195223IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9197222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSMNHFNDTQ VSNPADFGGK NTFDNCPQPR IANHQSSSIH SNFDFKKPRF SERNPNPRIP  60
LSVNRSKLSV PYKSELCLLF QRGKCYYGAN CHFSHSISDI RNPGLNTLAM EGHLNEDSKR  120
NTVRKMKECH WFASGKDCPY GDKCQYLHKC DQKVRRDVGF YRQSSAVNGG KDRSGNDQIE  180
CHSFSAGEDY DKSVFCKTKL CMKWERFGSC PYGVKCTYAH GKAELQELGS LTELENSYTS  240
RLKLPNSAAS CEMGRKIAKK LQGKRCFMDG DIKKISEVYA DWMEDRQNFH IPSSKIGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072245.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A022PZ474e-79A0A022PZ47_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-32C3H family protein